STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_08475Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)    
Predicted Functional Partners:
kgd
Alpha-ketoglutarate decarboxylase; Kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.999
BF93_08445
Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.991
BF93_08470
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.985
BF93_07690
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.951
BF93_08455
Cell division protein FtsI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.938
BF93_08450
Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.934
BF93_08465
Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.929
BF93_10305
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.929
BF93_08460
Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.
 
   
 0.922
BF93_08040
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.896
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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