Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF93_09640Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)    
Predicted Functional Partners:
BF93_09630
Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.974
BF93_09635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.937
BF93_14905
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.841
BF93_02695
ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.819
BF93_03910
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
   0.601
BF93_04550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.523
BF93_09645
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.486
BF93_14235
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.477
BF93_11600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.432
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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