Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF93_10310Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (287 aa)    
Predicted Functional Partners:
BF93_10300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.905
BF93_10305
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.832
BF93_05070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.825
BF93_06680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
ribA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
  
 
 0.679
BF93_06585
DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.638
BF93_14045
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.634
BF93_01385
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.614
BF93_13545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.595
BF93_04440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.573
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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