Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BF93_10635alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (761 aa)    
Predicted Functional Partners:
BF93_10665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.912
BF93_08195
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.907
BF93_03340
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.
 
   
  0.852
BF93_09285
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.768
BF93_17530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
BF93_03050
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
  0.625
BF93_10670
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.591
BF93_17160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.590
BF93_12155
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.521
BF93_06280
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 1 family.
  
 
  0.497
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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