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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_11205Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)    
Predicted Functional Partners:
BF93_16915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.985
BF93_11200
Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.945
BF93_11190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.848
BF93_11195
Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.807
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
    
   0.768
BF93_01315
Uridylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.757
BF93_10960
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.705
BF93_15765
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.705
BF93_17565
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.705
BF93_18245
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.705
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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