STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_11890Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)    
Predicted Functional Partners:
BF93_11870
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.845
BF93_11875
Sugar permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.834
BF93_11880
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.834
BF93_04160
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.815
BF93_11885
2,5-diketo-D-gluconic acid reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.763
BF93_11920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
BF93_10165
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.629
BF93_10135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
BF93_10125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.610
BF93_13390
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.604
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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