Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF93_12340Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
BF93_12345
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.887
BF93_16090
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.766
BF93_07015
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.763
BF93_11430
PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.748
BF93_05210
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.713
BF93_12330
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.539
BF93_12335
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.534
BF93_15995
Biopolymer transporter Tol; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
BF93_11315
Chorismate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.405
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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