Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF93_12385Endoribonuclease L-PSP; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)    
Predicted Functional Partners:
BF93_13820
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
  0.701
BF93_11315
Chorismate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.668
BF93_00040
Aminobenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.663
BF93_12390
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
BF93_12380
Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.545
BF93_12375
N-acyl-D-amino acid deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
BF93_12395
Aldehyde dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.419
BF93_03850
Methylmalonate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.410
BF93_04035
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.410
BF93_09160
Catalyzes the oxidation of acetaldehyde, benzaldehyde, propionaldehyde and other aldehydes; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.410
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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