Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BF93_12865ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)    
Predicted Functional Partners:
BF93_12870
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.991
BF93_12860
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.989
BF93_08910
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.843
BF93_12845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.835
BF93_07120
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.834
BF93_11875
Sugar permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.800
BF93_12335
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.800
BF93_08105
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.793
BF93_17600
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.792
BF93_00950
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.787
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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