Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
BF93_12920FmdB family regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)    
Predicted Functional Partners:
BF93_12925
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
BF93_12915
N-acyl homoserine lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.747
BF93_12930
Succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
       0.746
BF93_12935
Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.666
BF93_12910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.520
BF93_12905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.451
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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