Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF93_12950Carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)    
Predicted Functional Partners:
BF93_12530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.541
BF93_12550
Neuraminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.541
BF93_12955
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
BF93_12960
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
BF93_12965
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
BF93_06550
Shikimate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the shikimate dehydrogenase family.
    
   0.516
BF93_08945
Phosphatidylethanolamine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.486
BF93_05825
Chaperone HscA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.432
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 
 0.432
BF93_11255
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family.
    
 
 0.420
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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