STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_12970Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the serpin family. (445 aa)    
Predicted Functional Partners:
BF93_16945
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.484
BF93_10025
crotonobetainyl-CoA:carnitine CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.475
BF93_11255
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family.
    
  0.465
BF93_12955
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.450
BF93_12960
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.450
BF93_12965
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.450
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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