STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_13205Iron-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. (312 aa)    
Predicted Functional Partners:
BF93_13215
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
BF93_13210
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.993
BF93_06250
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.960
BF93_06255
Zinc ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.922
BF93_10385
Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.543
BF93_13220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.490
BF93_01840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.457
rpsN-2
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.409
BF93_13200
Siderophore-interacting protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.406
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.