STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_13620Glycoside hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)    
Predicted Functional Partners:
BF93_04255
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.888
BF93_14745
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.854
BF93_16565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
  0.676
BF93_10745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.578
BF93_00180
N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.569
BF93_18480
N-acetylmuramic acid-6-phosphate etherase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.569
BF93_13625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
BF93_13630
Prolyl oligopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
BF93_13635
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
BF93_08195
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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