Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF93_13620Glycoside hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)    
Predicted Functional Partners:
BF93_14745
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.847
BF93_04255
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.844
BF93_12375
N-acyl-D-amino acid deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.759
BF93_16565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
  0.665
BF93_13625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
BF93_13630
Prolyl oligopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
BF93_13635
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
BF93_18480
N-acetylmuramic acid-6-phosphate etherase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.550
BF93_08195
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
BF93_00180
N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.510
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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