Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF93_13950DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa)    
Predicted Functional Partners:
BF93_13955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.757
BF93_01385
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
BF93_13960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.582
BF93_17675
Pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.533
BF93_18695
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
BF93_13945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
whiB-3
Transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.473
BF93_04645
Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.428
BF93_09125
Topoisomerase II; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.412
BF93_02210
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.410
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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