Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF93_15610Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
BF93_15615
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.907
BF93_09650
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.795
BF93_11430
PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.748
BF93_15585
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
BF93_15605
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.703
BF93_04095
Ribulose 5-phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.648
BF93_10630
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.532
BF93_17295
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
BF93_15595
Ribose 5-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.416
BF93_15620
Transporter; Member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.408
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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