Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
BF93_15780Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)    
Predicted Functional Partners:
BF93_14030
copC domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.714
BF93_01090
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.710
BF93_15775
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
BF93_17060
2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.534
BF93_00415
Sulfite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.517
BF93_01085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.491
BF93_15785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.463
BF93_13570
Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.432
BF93_16595
6-phosphogluconate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.425
BF93_18355
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.425
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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