Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BF93_15995Biopolymer transporter Tol; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)    
Predicted Functional Partners:
BF93_07360
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.772
BF93_04335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.568
BF93_01840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.567
BF93_07910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.533
BF93_07915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.533
BF93_16765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.533
BF93_16565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.528
BF93_10630
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
  0.508
BF93_18025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.504
BF93_18040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.504
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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