Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
BF93_16245Xyloglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (830 aa)    
Predicted Functional Partners:
BF93_03275
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.850
BF93_05080
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.770
BF93_05385
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.767
BF93_17280
Arabinan endo-1,5-alpha-L-arabinosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.663
BF93_05350
Glucuronoxylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.659
BF93_12300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.648
BF93_11310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 0.645
BF93_10140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.622
BF93_12110
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.602
BF93_10150
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.579
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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