STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_16615Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)    
Predicted Functional Partners:
BF93_05805
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.765
BF93_05890
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.681
BF93_08550
Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.668
BF93_09435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.644
BF93_12535
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.599
BF93_15020
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
BF93_03210
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.557
BF93_16610
Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
BF93_06035
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
BF93_16620
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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