STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_17040Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)    
Predicted Functional Partners:
BF93_04600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
      0.900
BF93_18500
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.882
BF93_13505
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.878
BF93_17020
Urease accessory protein UreF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.826
ureC
Urease subunit alpha; Ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.798
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
       0.797
BF93_17035
Urease subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease gamma subunit family.
       0.794
BF93_17010
Urease accessory protein ureD; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.788
BF93_17030
Urease subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.788
BF93_08995
Formamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.627
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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