STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
BF93_17130Exonuclease V subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (1147 aa)    
Predicted Functional Partners:
BF93_17125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.953
BF93_17235
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.820
BF93_02190
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.779
BF93_17135
Pantothenate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.775
BF93_02210
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.771
BF93_17110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.622
recA
Hypothetical protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.529
BF93_07900
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.508
BF93_17120
Nucleotide pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.484
BF93_17875
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.482
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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