Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF93_17530Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)    
Predicted Functional Partners:
BF93_17520
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.742
BF93_17525
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.732
BF93_09285
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
BF93_02935
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.637
BF93_10635
alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
BF93_17535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.586
BF93_17515
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.474
BF93_17510
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
BF93_17320
phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.407
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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