Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF93_17545Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (378 aa)    
Predicted Functional Partners:
BF93_17525
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.917
BF93_17515
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.901
BF93_10555
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.825
BF93_10560
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.809
BF93_17540
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
BF93_10565
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.733
BF93_12330
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.632
BF93_10570
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.595
BF93_08095
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
BF93_08170
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.507
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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