STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_17675Pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (849 aa)    
Predicted Functional Partners:
BF93_17670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.758
BF93_06730
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
BF93_00265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.616
BF93_17875
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.593
BF93_18515
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.585
BF93_01385
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
BF93_11635
Transcriptional initiation protein Tat; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.557
BF93_10300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.556
whiB-3
Transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.551
BF93_13950
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.533
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.