Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF93_17965Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)    
Predicted Functional Partners:
BF93_17975
Inorganic phosphate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.871
BF93_17970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
BF93_17960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
BF93_17980
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.513
BF93_17200
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
BF93_17020
Urease accessory protein UreF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.430
BF93_17040
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
whiB-3
Transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.410
BF93_00090
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.407
BF93_14605
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.403
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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