Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF93_18145Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (868 aa)    
Predicted Functional Partners:
BF93_18205
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.904
BF93_01485
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.808
BF93_14185
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
BF93_04215
Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
BF93_17875
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.458
BF93_13965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
BF93_18150
Inosine-5-monophosphate dehydrogenase; Catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.440
BF93_16420
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
   
 0.439
BF93_00265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
BF93_15195
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.404
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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