Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF93_18235Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)    
Predicted Functional Partners:
BF93_18230
Kojibiose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
BF93_00045
Trehalose phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.776
BF93_16115
PTS mannose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.743
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.733
BF93_18225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.700
guaB
Inosine-5-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.664
BF93_09120
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.661
def-3
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.639
trmB
tRNA (guanine-N7)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.543
BF93_18205
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.531
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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