STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_18240Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
BF93_16620
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.779
BF93_09495
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
BF93_18230
Kojibiose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
BF93_18235
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
BF93_13115
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.455
def-3
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.437
BF93_18225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
BF93_15485
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
BF93_05915
Peptidase M15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.424
BF93_00445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.413
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.