Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
BF93_18650Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)    
Predicted Functional Partners:
BF93_01780
Metalloendopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
 0.766
BF93_08080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.668
BF93_00025
Metalloendopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
 0.574
BF93_02655
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.480
BF93_04430
rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.473
BF93_02445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.451
rpsB
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.
       0.446
BF93_04990
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.411
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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