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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58709.1Hypothetical protein. (162 aa)    
Predicted Functional Partners:
KRN58393.1
Hypothetical protein.
  
     0.765
KRN59519.1
Hypothetical protein.
  
     0.699
KRN58708.1
Hypothetical protein; Belongs to the UPF0356 family.
       0.670
KRN58164.1
Hypothetical protein.
  
     0.620
KRN59272.1
Hypothetical protein.
  
     0.613
KRN59422.1
Rod shape-determining protein MreD.
  
     0.550
KRN58394.1
Hypothetical protein.
  
     0.535
KRN59127.1
Hypothetical protein.
  
     0.532
KRN58310.1
Hypothetical protein.
  
     0.504
KRN59126.1
Hypothetical protein.
  
     0.499
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.