STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58808.1Hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family. (338 aa)    
Predicted Functional Partners:
KRN58812.1
ABC superfamily ATP binding cassette transporter substrate binding protein.
 
  
  0.919
KRN58809.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 
  
  0.890
KRN58811.1
ABC transporter permease component.
 
 
  0.883
KRN58810.1
Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.
 
 
  0.875
polA
DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.798
KRN59308.1
Hypothetical protein.
 
   
 0.690
KRN59217.1
Glutamate ABC transporter permease.
  
 
  0.515
KRN59218.1
Amino acid ABC transporter.
  
 
  0.515
guaA
GMP synthase domain-containing protein; Catalyzes the synthesis of GMP from XMP.
     
 0.463
KRN58806.1
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
    0.433
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.