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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58811.1ABC transporter permease component. (232 aa)    
Predicted Functional Partners:
KRN58809.1
ABC superfamily ATP binding cassette transporter, ABC protein.
  0.973
KRN59218.1
Amino acid ABC transporter.
  0.968
KRN58812.1
ABC superfamily ATP binding cassette transporter substrate binding protein.
 
  0.959
KRN58734.1
Ectoine hydroxyectoine ABC transporter, ATP-binding protein.
  0.937
KRN58389.1
Amino acid ABC transporter.
  0.918
KRN59297.1
High affinity cystine binding protein; Belongs to the bacterial solute-binding protein 3 family.
  0.910
KRN59300.1
L-cystine ABC superfamily ATP binding cassette transporter, binding protein YckK; Belongs to the bacterial solute-binding protein 3 family.
  0.901
KRN59296.1
Atp-binding protein-like protein.
  0.900
KRN59420.1
Glutamine ABC transporter ATP-binding component.
  0.895
KRN58808.1
Hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family.
 
 
  0.883
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.