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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58920.1Xylose isomerase. (194 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.895
KRN59133.1
Glucokinase.
    
 0.815
KRN59493.1
Fructokinase.
    
 0.815
KRN59612.1
Beta galactosidase small subunit.
    
  0.794
KRN58468.1
Gluconate kinase; Belongs to the FGGY kinase family.
  
 
 0.605
KRN58932.1
ROK family protein.
 
  
 0.601
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
    0.536
KRN59397.1
Kinase, PfkB family.
    
 0.536
KRN59398.1
HTH domain protein.
    
 0.536
KRN58541.1
L-threonine 3-dehydrogenase.
     
 0.500
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.