Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KRN58134.1Undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase. (287 aa)    
Predicted Functional Partners:
KRN59138.1
Hypothetical protein.
 
 
 0.727
KRN58133.1
Hypothetical protein.
  
   0.649
KRN58160.1
Teichoic acid glycosylation protein.
 
 
 0.641
KRN59016.1
Hypothetical protein.
  
 
 0.600
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
 
 0.553
KRN59488.1
Hypothetical protein.
  
 
 0.545
KRN58138.1
Glycosyltransferase.
  
 
 0.544
KRN59537.1
UTP--glucose-1-phosphate uridylyltransferase.
    
 0.481
KRN58135.1
Hypothetical protein.
       0.476
KRN58614.1
D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane.
  
  0.456
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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