Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN58175.1Transcriptional regulator. (145 aa)    
Predicted Functional Partners:
KRN58176.1
Nucleoside-diphosphate-sugar epimerase.
 
   
 0.855
KRN59006.1
Cysteine desulfurase NifS.
  
 
 0.763
KRN59430.1
Cysteine desulfurase NifS.
  
 
 0.763
KRN58985.1
NADH-flavin reductase.
  
  
 0.649
KRN58173.1
ABC transporter permease component.
     
 0.630
KRN58174.1
Choline ABC transporter, ATP-binding protein.
       0.565
KRN58418.1
NifU family SUF system FeS assembly protein.
  
  
 0.553
KRN58294.1
Metal-dependent regulator.
     
 0.419
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.