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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58186.1Beta-lactamase. (346 aa)    
Predicted Functional Partners:
KRN58185.1
Hypothetical protein.
       0.693
KRN58614.1
D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane.
 
  
 0.604
KRN58187.1
Hypothetical protein.
 
     0.546
guaA
GMP synthase domain-containing protein; Catalyzes the synthesis of GMP from XMP.
     
 0.536
KRN59464.1
Beta-lactamase.
  
     0.514
KRN58909.1
Hypothetical protein.
  
  
 0.491
dltA
D-alanine-poly(phosphoribitol) ligase, subunit 1; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Belongs to [...]
 
  
 0.485
KRN58612.1
D-alanyl transfer protein.
 
  
 0.478
KRN58198.1
Transcriptional regulator, TetR family.
  
     0.464
KRN58322.1
PTS system sucrose-specific IIABC component.
  
  
 0.459
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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