STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58214.1Quaternary-amine-transporting ATPase. (389 aa)    
Predicted Functional Partners:
KRN58173.1
ABC transporter permease component.
 0.998
KRN58216.1
Periplasmic glycine betaine choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding).
 0.998
KRN58215.1
Binding--dependent transport system inner membrane component family protein.
 0.991
KRN58217.1
Binding-protein-dependent transport systems inner membrane component.
 0.985
KRN58174.1
Choline ABC transporter, ATP-binding protein.
  
  
 
0.924
KRN59466.1
Lipid A export permease ATP-binding protein MsbA.
 
     
0.897
KRN58124.1
Binding-protein-dependent transport systems inner membrane component.
 
      0.800
KRN58235.1
Nodulation ABC transporter NodI.
 
    
0.466
KRN59421.1
Ectoine hydroxyectoine ABC transporter, permease EhuD.
 
      0.422
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.