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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58216.1Periplasmic glycine betaine choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding). (307 aa)    
Predicted Functional Partners:
KRN58215.1
Binding--dependent transport system inner membrane component family protein.
 
 0.999
KRN58214.1
Quaternary-amine-transporting ATPase.
 0.998
KRN58217.1
Binding-protein-dependent transport systems inner membrane component.
 
 0.997
KRN58174.1
Choline ABC transporter, ATP-binding protein.
 0.985
KRN58173.1
ABC transporter permease component.
 
 
0.973
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.