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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58270.1Hypothetical protein. (308 aa)    
Predicted Functional Partners:
KRN59597.1
Transcriptional regulator, AraC family.
  
     0.764
KRN59586.1
KxYKxGKxW signal domain protein.
  
     0.754
KRN58127.1
Hypothetical protein.
  
     0.728
KRN58117.1
Kxykxgkxw signal domain protein.
 
  
 0.723
KRN59579.1
Dextransucrase.
  
     0.708
KRN59290.1
Kxykxgkxw signal domain protein.
  
     0.702
KRN58973.1
Transcriptional regulator, AraC family.
  
     0.701
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.673
KRN58116.1
Kxykxgkxw signal domain protein.
  
     0.663
KRN58128.1
Hypothetical protein.
  
     0.660
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.