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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58296.1ABC superfamily ATP binding cassette transporter permease and substrate binding protein. (640 aa)    
Predicted Functional Partners:
KRN58297.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 
 0.997
KRN58298.1
Integral membrane sensor signal transduction histidine kinase.
 
 
 0.951
KRN58299.1
Two component transcriptional regulator.
 
    0.898
KRN58537.1
Peptide ABC transporter permease and ATP-binding component.
  
  0.773
KRN58538.1
Lipoprotein releasing system, ATP-binding protein.
  
  0.773
KRN58555.1
Cell division ATP-binding protein FtsE.
  
  0.773
KRN59308.1
Hypothetical protein.
  
     0.522
KRN58910.1
Hypothetical protein.
  
     0.509
KRN59014.1
Hypothetical protein.
  
     0.501
KRN58308.1
Major facilitator superfamily MFS 1 transporter.
      
 0.467
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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