KRN58304.1 protein (Lactobacillus secaliphilus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRN58304.1

N-acetyltransferase GCN5. (145 aa)

Predicted Functional Partners:

KRN58303.1

0.701

KRN58302.1

0.524

rpoC

0.424

ftsH

0.410

Your Current Organism:

Lactobacillus secaliphilus

NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRN58302.1	KRN58303.1	IV45_GL000747	IV45_GL000748	UspA domain-containing protein.	Multicopper oxidase.	0.501
KRN58302.1	KRN58304.1	IV45_GL000747	IV45_GL000749	UspA domain-containing protein.	N-acetyltransferase GCN5.	0.524
KRN58303.1	KRN58302.1	IV45_GL000748	IV45_GL000747	Multicopper oxidase.	UspA domain-containing protein.	0.501
KRN58303.1	KRN58304.1	IV45_GL000748	IV45_GL000749	Multicopper oxidase.	N-acetyltransferase GCN5.	0.701
KRN58304.1	KRN58302.1	IV45_GL000749	IV45_GL000747	N-acetyltransferase GCN5.	UspA domain-containing protein.	0.524
KRN58304.1	KRN58303.1	IV45_GL000749	IV45_GL000748	N-acetyltransferase GCN5.	Multicopper oxidase.	0.701
KRN58304.1	ftsH	IV45_GL000749	IV45_GL001380	N-acetyltransferase GCN5.	ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.410
KRN58304.1	rpoC	IV45_GL000749	IV45_GL000722	N-acetyltransferase GCN5.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.424
ftsH	KRN58304.1	IV45_GL001380	IV45_GL000749	ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	N-acetyltransferase GCN5.	0.410
ftsH	rpoC	IV45_GL001380	IV45_GL000722	ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.525
rpoC	KRN58304.1	IV45_GL000722	IV45_GL000749	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	N-acetyltransferase GCN5.	0.424
rpoC	ftsH	IV45_GL000722	IV45_GL001380	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.525