STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58409.1Hypothetical protein. (365 aa)    
Predicted Functional Partners:
KRN58405.1
3-hexulose-6-phosphate synthase.
 
  
 0.961
KRN58407.1
Ascorbate-specific PTS system enzyme IIC.
 
 0.939
KRN58406.1
Phosphotransferase system.
 
 
 0.930
KRN58446.1
Multidomain protein.
    
 0.910
KRN58408.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system.
 
  
  0.893
KRN58404.1
Phosphoserine phosphatase.
 
   
 0.853
KRN58410.1
Transcriptional regulator.
 
  
 0.671
KRN58443.1
Ascorbate-specific PTS system enzyme IIC.
 
 
 0.516
KRN58403.1
L-ribulose-5-phosphate 4-epimerase.
 
   
 0.469
KRN58444.1
Hypothetical protein.
  
 
 0.462
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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