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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58410.1Transcriptional regulator. (254 aa)    
Predicted Functional Partners:
KRN58322.1
PTS system sucrose-specific IIABC component.
  
  
 0.751
KRN58634.1
PTS family porter enzyme II.
  
  
 0.751
KRN58446.1
Multidomain protein.
  
  
 0.678
KRN58409.1
Hypothetical protein.
 
  
 0.671
KRN59397.1
Kinase, PfkB family.
  
 
 0.603
KRN59398.1
HTH domain protein.
  
 
 0.603
KRN58408.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system.
 
  
 0.591
KRN58192.1
Short chain dehydrogenase.
 
    0.555
KRN58289.1
Hypothetical protein.
    
   0.543
KRN58407.1
Ascorbate-specific PTS system enzyme IIC.
 
   
 0.538
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.