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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58431.1ABC transporter ATP-binding component. (457 aa)    
Predicted Functional Partners:
KRN58432.1
ABC superfamily ATP binding cassette transporter permease protein.
 
 0.993
KRN58430.1
Hypothetical protein.
 
  
 0.971
ecfT
Cobalt ABC transporter, permease CbiQ; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.921
KRN58234.1
ABC transporter ATP-binding component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
0.757
KRN58235.1
Nodulation ABC transporter NodI.
 
 
0.749
KRN58123.1
D-methionine ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
0.732
KRN58125.1
Binding-protein-dependent transport systems inner membrane component.
  
 
 0.669
KRN58124.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.666
KRN58433.1
Hypothetical protein.
       0.560
KRN58126.1
Extracellular solute-binding protein family 5.
  
 
 0.525
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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