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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58467.1Fructuronate reductase. (548 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 0.989
KRN58446.1
Multidomain protein.
  
 
 0.971
KRN58938.1
Hypothetical protein.
 
  
  0.942
uxaC
Glucuronate isomerase.
 
 
 0.882
uxaC-2
Glucuronate isomerase.
 
 
 0.879
KRN58472.1
Transcriptional regulator.
 
   
 0.750
KRN58466.1
2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.717
KRN58468.1
Gluconate kinase; Belongs to the FGGY kinase family.
    
 0.638
KRN58465.1
NRPS condensation domain-containing protein.
 
     0.618
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.578
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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