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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58488.1Polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (428 aa)    
Predicted Functional Partners:
KRN58489.1
Hypothetical protein.
     0.990
KRN58623.1
Hypothetical protein.
     0.977
KRN58212.1
Hypothetical protein.
  
 0.895
KRN58916.1
Sialic acid-specific 9-O-acetylesterase.
 
  0.693
KRN58624.1
Hypothetical protein.
 
     0.662
KRN59347.1
Hypothetical protein.
 
  0.660
KRN58491.1
Hypothetical protein.
 
    0.641
KRN59595.1
Hypothetical protein.
 
  0.629
KRN58940.1
F5 8 type C domain protein.
  
  0.604
KRN58943.1
LPXTG-motif cell wall anchor domain protein.
  
  0.604
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.