Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
KRN58505.1LPXTG-motif cell wall anchor domain protein. (597 aa)    
Predicted Functional Partners:
KRN59308.1
Hypothetical protein.
  
     0.727
KRN58940.1
F5 8 type C domain protein.
  
  0.679
KRN58554.1
Hypothetical protein.
  
     0.636
KRN59312.1
Regulatory protein.
  
     0.605
KRN58939.1
Glycosyltransferase.
  
     0.589
KRN59314.1
Dehydrogenase.
  
     0.548
KRN58943.1
LPXTG-motif cell wall anchor domain protein.
 
  
  0.543
KRN58286.1
Acyl-coa thioesterase.
  
     0.492
KRN59622.1
Hypothetical protein.
  
     0.479
KRN58127.1
Hypothetical protein.
 
  
  0.467
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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