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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58506.1Lipoprotein. (1361 aa)    
Predicted Functional Partners:
KRN58679.1
Cell division protein FtsK SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family.
    
   0.710
KRN58117.1
Kxykxgkxw signal domain protein.
 
  
0.686
dltC
Hypothetical protein; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall.
  
   0.678
acpP
Hypothetical protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
   0.626
KRN58935.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
  0.604
KRN58488.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
  0.604
KRN58515.1
Hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
  
  0.604
KRN59004.1
Hypothetical protein.
    
  0.600
KRN59591.1
RNA polymerase sigma-30 factor; Belongs to the sigma-70 factor family.
    
  0.600
KRN58637.1
Chromosome segregation ATPase.
    
   0.598
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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