STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58520.1Hypothetical protein. (386 aa)    
Predicted Functional Partners:
KRN58519.1
Hypothetical protein.
 
    0.954
KRN58521.1
DNA-3-methyladenine glycosylase II; Belongs to the DNA glycosylase MPG family.
  
    0.775
KRN58518.1
Hypothetical protein.
       0.774
KRN59186.1
Hypothetical protein.
  
     0.669
KRN58279.1
Transcriptional regulator.
  
     0.641
KRN58512.1
Hypothetical protein.
  
     0.640
KRN58516.1
Appr-1-p processing domain-containing protein.
       0.618
KRN58517.1
Endothelin-converting protein 1.
       0.618
KRN58515.1
Hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
       0.573
KRN58522.1
Hypothetical protein.
       0.560
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.